IGVFFI2083GAFX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3290ZBHS(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP003_G3_P053_L003_R2

md5sum

0ebd62ee3f686bc6e4582257a39e3699

Content MD5sum

eadd59b92ff4c4c94de97e09b4e424a4

File Size

1.0 GB

Submitted File Name

Multiome_ATAC_RP003_G3_L003_P053_S3_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

59334862

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8908NMRB

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 81 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples