IGVFFI2081KHXT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9162IPID(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X043_G2_P043_L007_R2

md5sum

357a7b9bbb513fded8f02027a68c462f

Content MD5sum

1b9e413e3f494d047df92734b73924ec

File Size

1.2 GB

Submitted File Name

Multiome_ATAC_X043_G2_L002_P043_S28_L007_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

68548095

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8592YDYJ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples