IGVFFI2076BOCT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7494CPQT(CRISPR prime editing Variant-EFFECTS integrating a guide (sgRNA) library targeting sequence variants in a genomic locus)

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:Jurkat_Stim-IL2RA_prom-BioRep2-FFRep3-BinD-PCRRep2_I1

md5sum

247eeb42ac3a7713bd06ed201964d9d9

Content MD5sum

36042c488a51a213406be2df6d398f4a

File Size

1.7 MB

Submitted File Name

Jurkat_Stim-IL2RA_prom-BioRep2-FFRep3-PCRRep2-BinD_S48_I1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Illumina Read Type

Index

TTAATCAG:TTGT

Average Read Length

Read Count

204795

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM1871BLFB

InVitroSystem

Jurkat

Jurkat cell line, male, Homo sapiens (sorting details: FACS bin for 76-100% expression of IL2RA) treated with 100 ng/mL phorbol 13-acetate 12-myristate for 24 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 24 hours, modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2), transfected with a guide library