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INDEXED
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SequenceFile
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IGVFFI2075LZEJ
IGVFFI2075LZEJ
released
validated
Json view
File Set
IGVFDS5331YSAT
(Parse SPLiT-seq)
Summary
R2 reads from sequencing run 6
File Format
fastq
Content Type
reads
md5sum
061360510f232ab3ed579d1c384b7205
Content MD5sum
6c1c3a9e5690dd7ae7092447f9cb75ce
File Size
5.9 GB
Submitted File Name
igvf_011/nova2/igvf_011_B11_D_nova_N2_L002_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ali Mortazavi, UCI
(
HG012077
—
Ali Mortazavi
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
6
Flowcell ID
H7KYTDSX7
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
86
Read Count
168884229
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM6125CUPK
MultiplexedSample
gastrocnemius
,
left cerebral cortex
,
left hippocampal formation
,
right cerebral cortex
,
right hippocampal formation
multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI6102JFAJ
tar
sparse gene count matrix
cell by gene in sparse gene count matrix
Ali Mortazavi, UCI
1.3 GB
validated
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI9427AMEW
yaml
seqspec
seqspec of IGVFFI6167QLGP, IGVFFI2075LZEJ
Ali Mortazavi, UCI
1.4 KB
validated