IGVFFI2074EFVM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9832WUNH(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP031_G7_P079_L007_R3

md5sum

a8b68219aca6d04e4fba912af6bae3b6

Content MD5sum

f5434fc3923431362ee215fd69602adb

File Size

12 GB

Submitted File Name

Multiome_ATAC_RP031_G7_L007_P079_S15_L007_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19U7CA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

165153303

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0980JQZM

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) putamen tissue associated with Parkinson's disease; ... and 6 more samples