IGVFFI2056VRIP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5012KEPP(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP010_G4_P057_L004_I1

md5sum

1004217d93a97e28020b958cc6c99da2

Content MD5sum

10c7923116d88462d4c5186ef0068707

File Size

307 MB

Submitted File Name

Multiome_ATAC_RP010_G4_L004_P057_S20_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

40205802

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3126EQPY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples