{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI2054TJPO/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI2054TJPO",
"aliases": [
"chongyuan-luo:pgp_snm3c_C39_day9_L8_R1"
],
"assay_titles": [
"snM3C-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012079/",
"component": "networks"
},
"content_md5sum": "1e11192cfb41db18df3f77c8e913c76f",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-11-18T02:20:10.512580+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS9196PDRB/",
"accession": "IGVFDS9196PDRB",
"file_set_type": "experimental data",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM3665LIKW/",
"accession": "IGVFSM3665LIKW",
"classifications": [
"reprogrammed cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000057/",
"status": "released",
"term_name": "fibroblast"
}
],
"status": "released",
"summary": "fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 9 days, Homo sapiens",
"targeted_sample_term": {
"@id": "/sample-terms/EFO_0004905/",
"status": "released",
"term_name": "induced pluripotent stem cell"
},
"taxa": "Homo sapiens"
}
],
"status": "released",
"summary": "snM3C-seq"
},
"file_size": 3313476310,
"gene_list_for": [],
"href": "/sequence-files/IGVFFI2054TJPO/@@download/IGVFFI2054TJPO.fastq.gz",
"illumina_read_type": "R1",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/chongyuan-luo/",
"title": "Chongyuan Luo, UCLA"
},
"lane": 8,
"loci_list_for": [],
"maximum_read_length": 151,
"md5sum": "34ba707aad21585918b1e65e26147d30",
"mean_read_length": 148.87,
"minimum_read_length": 35,
"quality_metrics": [],
"read_count": 45477063,
"release_timestamp": "2025-02-11T00:54:51.753605+00:00",
"s3_uri": "s3://igvf-files/2024/11/18/445dc713-31e4-478b-a50f-7a86159fccf1/IGVFFI2054TJPO.fastq.gz",
"schema_version": "15",
"seqspecs": [],
"sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0022840/",
"status": "released",
"term_name": "Illumina NovaSeq X"
},
"sequencing_run": 1,
"status": "released",
"submitted_by": {
"@id": "/users/ec46dfbd-fc11-419d-81e8-8ba82ffe6375/",
"title": "Terence Li"
},
"submitted_file_name": "/home/ec2-user/igvf/submit/fastq/year2/snm3c/yzcl47/20231005-3C39D9-Pos1-C09_S30_L008_R1_001.fastq.gz",
"submitter_comment": "Changed from Novaseq 6000 to Novaseq X on 20250224",
"summary": "R1 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "445dc713-31e4-478b-a50f-7a86159fccf1"
}