IGVFFI2049ZZFE

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI2049ZZFE/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI2049ZZFE",
10    "aliases": [
11        "harinder-singh:multiplexed_perturbation_scRNAseq_20240212_GEX_NGS_2_LAF7052A9_L004_I2"
12    ],
13    "assay_titles": [
14        "scRNA-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012041/",
19        "component": "networks"
20    },
21    "checkfiles_version": "v17",
22    "content_md5sum": "e77e4c93f876128cbf644eff824aa98b",
23    "content_type": "reads",
24    "controlled_access": true,
25    "creation_timestamp": "2025-03-05T02:06:27.995785+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS5867EPVA/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS5867EPVA",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002631/",
38            "term_name": "single-cell RNA sequencing assay"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/multiplexed-samples/IGVFSM5472KWSO/",
44                "@type": [
45                    "MultiplexedSample",
46                    "Sample",
47                    "Item"
48                ],
49                "accession": "IGVFSM5472KWSO",
50                "classifications": [
51                    "differentiated cell specimen",
52                    "multiplexed sample"
53                ],
54                "disease_terms": [],
55                "modifications": [],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/CL_0000236/",
59                        "status": "released",
60                        "term_name": "B cell"
61                    }
62                ],
63                "status": "preview",
64                "summary": "multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 4 days; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 6 days; ... and 12 more samples",
65                "taxa": "Homo sapiens",
66                "treatments": []
67            }
68        ],
69        "status": "preview",
70        "summary": "scRNA-seq"
71    },
72    "file_size": 2368573882,
73    "gene_list_for": [],
74    "href": "/sequence-files/IGVFFI2049ZZFE/@@download/IGVFFI2049ZZFE.fastq.gz",
75    "illumina_read_type": "I2",
76    "input_file_for": [
77        "/matrix-files/IGVFFI3987VJYL/"
78    ],
79    "integrated_in": [],
80    "lab": {
81        "@id": "/labs/harinder-singh/",
82        "title": "Harinder Singh, University of Pittsburgh"
83    },
84    "lane": 4,
85    "loci_list_for": [],
86    "maximum_read_length": 10,
87    "md5sum": "5751aa4c45bdae62319ca409b4d4a3cf",
88    "mean_read_length": 10,
89    "minimum_read_length": 10,
90    "quality_metrics": [],
91    "read_count": 374283778,
92    "s3_uri": "s3://igvf-restricted-files/2025/03/05/bbc4c7a6-9f36-404b-a0bd-cecacdb6ce68/IGVFFI2049ZZFE.fastq.gz",
93    "schema_version": "15",
94    "seqspecs": [],
95    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
96    "sequencing_platform": {
97        "@id": "/platform-terms/EFO_0008637/",
98        "status": "released",
99        "term_name": "Illumina NovaSeq 6000"
100    },
101    "sequencing_run": 2,
102    "status": "preview",
103    "submitted_by": {
104        "@id": "/users/d2668d67-5e6f-49e8-82ca-7bb12229f892/",
105        "title": "Nicholas Pease"
106    },
107    "submitted_file_name": "/ix/djishnu/Common_Folder/Pease_Data/20240318_PerturbSeq_2/Singh_021224_2_Pool_5Pv2_GEX_LAF7052A9_S2_L004_I2_001.fastq.gz",
108    "summary": "I2 reads from sequencing run 2",
109    "upload_status": "validated",
110    "uuid": "bbc4c7a6-9f36-404b-a0bd-cecacdb6ce68"
111}