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INDEXED
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SequenceFile
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IGVFFI2045LGOK
IGVFFI2045LGOK
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS3128JSFB
(single-nucleus RNA sequencing assay (10x multiome))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X017_G1_P016_L004_I2
md5sum
23a3c0bdb3aad9bc7918421d86444bb7
Content MD5sum
7acf9d9ac6d95721f68f1062768ab166
File Size
1.4 GB
Submitted File Name
Multiome_RNA_X017_G1_L001_P016_S9_L004_I2_001.fastq.gz
Checkfiles Version
v20
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
HTHCCDSX5
Lane
4
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
I2
Average Read Length
10
Read Count
239863279
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM4187QNCX
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ryan Corces, Gladstone Institute UCSF