IGVFFI2044WRQE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6846AEHO(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP026_G6_P075_L005_R3

md5sum

0a3337e29a4d6f8b244d46d817032196

Content MD5sum

6b7655c526d5a23b30b1a36103492342

File Size

14 GB

Submitted File Name

Multiome_ATAC_RP026_G6_L006_P075_S22_L005_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

199440658

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5241MOXO

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 6 more samples