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IGVFFI2043DXXB

released
validated
File Set
IGVFDS0448BPQQ(CRISPR activation RNA-seq integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci)
Summary
reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jay-shendure:CRISPRa_singlevalidations_K562_TBR1_rep1_R2
md5sum
08a52b007af18188fdcf4bae917717c7
Content MD5sum
d9cf488510465ce7509b60c76834b997
File Size
152 MB
Submitted File Name
/net/shendure/vol10/projects/IGVFtemp/pooled_fastqs/K562_gRNA_4_Rep_1_TBR1_S7_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jay Shendure, UW

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Lane
1
Sequencing Kit
NextSeq 1000/2000 P1 Reagent Kit
Average Read Length
110
Read Count
2769956

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line modified with CRISPRa Sp-dCas9-VP64, transfected with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
csv
differential gene expression quantifications
differential gene expression quantifications
Jay Shendure, UW
39 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2043DXXB
Jay Shendure, UW
1.0 KB
validated