IGVFFI2037LASD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5800WXVK(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X041_G5_P041_L003_R1

md5sum

1cb471b7343693baf63116358253abfa

Content MD5sum

2896165c70fab15ed2fe363b42e92db7

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_X041_G5_L005_P041_S15_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

62083231

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4462GKQC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; Homo sapiens (female, 82 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples