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INDEXED
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SequenceFile
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IGVFFI2033NCGX
IGVFFI2033NCGX
released
validated
Json view
File Set
IGVFDS4869FXYY
(untransfected prime editing Variant-EFFECTS)
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-Jurkat-PE2_Exp2_NegControl-PCRrep2_R2
md5sum
ff462327462536fb9dce699efb90e403
Content MD5sum
fc8f2c38ced32b1e43817075520775f0
File Size
8.0 MB
Submitted File Name
230423pPPIFEnformerJurkat-Jurkat-PE-NA-Amp-pPPIF-BioRep1-FFRep1_BinNeg-PCRrep2_S402_R2_001.fastq.gz
Sequencing Details
Sequencing Platform
Illumina NextSeq 550
Sequencing Run
1
Illumina Read Type
R2
Index
AGGTTATC:TTGT
Average Read Length
150
Read Count
225400
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM3422KXGR
InVitroSystem
Jurkat
Jurkat cell line, male, Homo sapiens modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2)
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford