IGVFFI2030SKMP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8376IRHS(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP008_G1_P058_L002_R1

md5sum

6fa59d767c494c56940ba6acc1b2cce0

Content MD5sum

f6f7ce19a39300497de90243ce9ddf56

File Size

1.2 GB

Submitted File Name

Multiome_RNA_RP008_G1_L001_P058_S1_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

61109111

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3315GFKX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples