IGVFFI2029EJDA

released

validated

File Set

IGVFDS6885CVPU(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_CCND1_Auxin0hrs-FF1-BinE-PCR1-Rep1_S221

md5sum

8ad83d74057bdede7f0fdab426cc7901

Content MD5sum

482d1b13c66e52ed1b1f994af6fe4669

File Size

24 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220308B014_CCND1_SSFA2_FAM3C/fastq_trim/CCND1-Auxin0hrs-FF1-BinE-PCR1-Rep1_S221_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

AATGTTCT:TTGA

Average Read Length

Read Count

1115364

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM7928IVYJ

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin E for 80-90% expression of CCND1) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library