IGVFFI2023UBQW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2675HBRY(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X028_G4_P028_L004_I1

md5sum

42c0020a26ddd8d43845c320223eed93

Content MD5sum

94a06bddf2a31ae42e96b9d92ec61d56

File Size

1.5 GB

Submitted File Name

Multiome_RNA_X028_G4_L004_P028_S21_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

243955226

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4873ZKQI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples