IGVFFI2018EWSF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4859WSNO(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X051_G8_P069_L003_R3

md5sum

3254907cb1e3d8a840f70fb191420c97

Content MD5sum

e9920cc0dc0a8cdf0bb71005d9cd1fa3

File Size

9.2 GB

Submitted File Name

Multiome_ATAC_X051_G8_L008_P069_S16_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

136864973

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5596NTCY

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 8 more samples