IGVFFI2009UHTY

released
validated
File Set
IGVFDS4057PFBU(gRNA sequencing for mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:auxiliary_files_CRUDO_TAPseq-Auxin6hrs-Rep2_S2_R2
md5sum
15182e651f5b0c674d8c322f131d3f65
Content MD5sum
aa146e92a90550e1b4b31f271c2ed599
File Size
132 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/221224_Cohesin_TAPseq_v2/221219_P044_cohesin_tapseq_v2/outs/fastq_path/L381_S4_L002_R2_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Lane
2
Illumina Read Type
R2
Average Read Length
90
Read Count
2955304

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI3454BUML, IGVFFI4244AIHE, IGVFFI2009UHTY
Jesse Engreitz, Stanford
1.2 KB
validated

Attribution