IGVFFI2006EZIM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8225TLID(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G8_P055_L003_R1

md5sum

00bffc472747f96d3dae3aed14c15929

Content MD5sum

6d4b9f728b318b63c368c9a3ae1c3c0a

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_RP005_G8_L008_P055_S4_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

53154341

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5214FLGB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples