IGVFFI2002GGIA

released
validated
File Set
IGVFDS1345STXL(gRNA sequencing for CRISPR knockout FACS screen integrating a guide (sgRNA) library targeting transcription start sites in many genes)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
charles-gersbach:cd8-tcells-measurement-set-crispr-ko-tfome-low-bin-rep1-R1
md5sum
5396b667b191f20217b3e84da87c26f5
Content MD5sum
cd237e8590c95acaee4e143e86856aac
File Size
800 MB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_2_T_cell_project_1/pSM73_L2_S2_L001_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Flowcell ID
AACJJ7LM5
Lane
1
Sequencing Kit
MiSeq Reagent Kit v2
Illumina Read Type
R1
Average Read Length
21
Read Count
45527974

Samples

1 item
Accession
Type
Sample Terms
Summary
PrimaryCell
CD8-positive, alpha-beta memory T cell, Homo sapiens (sorting details: FACS bin for 0-10% expression of IL7R) modified with CRISPRko Sp-Cas9, transduced (lentivirus) with a guide library (MOI of 0.4)

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
bam
alignments
custom assembly unfiltered alignments
Charles Gersbach, Duke
549 MB
validated

Attribution