Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
SequenceFile
/
IGVFFI1976KVKH
IGVFFI1976KVKH
released
validated
Json view
File Set
IGVFDS6385JXFZ
(untransfected prime editing Variant-EFFECTS)
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:220228_8merInsertion-THP1-Amp_PPIF_promoter-THP1-PE2_Exp3_NegControl-PCRrep2_I2
md5sum
cac3df5e898cd64a0dea7239568ef0ee
Content MD5sum
5e0ab38ffce179016d6f37e997a18964
File Size
12 MB
Submitted File Name
220228pPPIF-FFSample-1-DNA-pPPIF-Amp-pPPIF-1-1-2-BinNeg_I2_001.fastq.gz
Sequencing Details
Sequencing Platform
Illumina NextSeq 550
Sequencing Run
1
Illumina Read Type
I2
Index
GCCGCAAC:TGAC
Average Read Length
4
Read Count
1619504
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM2216EFEX
InVitroSystem
THP-1
THP-1 cell line, male, Homo sapiens modified with CRISPR prime editing Sp-nCas9-M-MLV RT (PE2)
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford