IGVFFI1969DXGL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8544KWZX(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP028_G6_P077_L006_R3

md5sum

78457a951857452933e2aaedef46ba1f

Content MD5sum

51f8382cc6cd83fdada7cc1ec9d2fdfc

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_RP028_G6_L006_P077_S24_L006_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

56612664

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5440WCSX

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples