IGVFFI1951HAIF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3677FWQE(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X052_G6_P071_L006_R1

md5sum

3021b11c51b5b2d0a6b3e52bf706c169

Content MD5sum

5c145a4696c3dac763c9034ec248c207

File Size

14 GB

Submitted File Name

Multiome_ATAC_X052_G6_L006_P071_S42_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

195764132

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0335XJKH

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 70 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease; ... and 8 more samples