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INDEXED
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SequenceFile
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IGVFFI1945KSMN
IGVFFI1945KSMN
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS7168ZWPA
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X050_G3_P066_L008_R1
md5sum
f6e44264d557be948ec85b5b5d42544e
Content MD5sum
8ddbdb95ced2dfdec57c3d4f06b8ab26
File Size
1.0 GB
Submitted File Name
Multiome_RNA_X050_G3_L003_P066_S33_L008_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
2257GYLT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
53703186
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3258TKYR
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples