IGVFFI1943WFER

released
validated
File Set
IGVFDS8794YVNF(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)
Summary
reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF1-BinF-PCR1_Rep2_S61
md5sum
d10168a32c36b79a4afb037cc035202b
Content MD5sum
e4a421352bb72c8fb77efb20f4ce6054
File Size
20 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF1-BinF-PCR1-Rep2_S61_R1_001.fastq.gz

Sequencing Details

Sequencing Platform
Sequencing Run
1
Index
AGTTGCTT:TCTC
Average Read Length
21
Read Count
1015590

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1943WFER
Jesse Engreitz, Stanford
911 B
validated

Attribution