Home

IGVFFI1940JBUR

released
validated
File Set
IGVFDS0165CVUH(CRISPR activation RNA-seq integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci)
Summary
reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jay-shendure:CRISPRa_singlevalidations_K562_DNMT3B_rep2_R2
md5sum
1fc359be0f424fb4f12b465ed6c5b0ae
Content MD5sum
bbda034e1bb5324e163c3da6250843e7
File Size
311 MB
Submitted File Name
/net/shendure/vol10/projects/IGVFtemp/pooled_fastqs/K562_gRNA_2_Rep_2_DNMT3B_S2_R2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jay Shendure, UW

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Lane
1
Sequencing Kit
NextSeq 1000/2000 P1 Reagent Kit
Average Read Length
110
Read Count
5717858

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line modified with CRISPRa Sp-dCas9-VP64, transfected with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
csv
differential gene expression quantifications
differential gene expression quantifications
Jay Shendure, UW
39 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1940JBUR
Jay Shendure, UW
1.0 KB
validated