{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI1934NWYG/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI1934NWYG",
"aliases": [
"jesse-engreitz:230423pPPIFEnformer-Jurkat-Amp_PPIF_promoter-BioRep1-FFrep3-BinB-PCRrep3_R2"
],
"audit": {
"INTERNAL_ACTION": [
{
"category": "mismatched status",
"detail": "Released sequence file [IGVFFI1934NWYG](/sequence-files/IGVFFI1934NWYG/) has in progress subobject auxiliary set [IGVFDS1470QEOX](/auxiliary-sets/IGVFDS1470QEOX/).",
"level": 30,
"level_name": "INTERNAL_ACTION",
"name": "audit_item_status",
"path": "/sequence-files/IGVFFI1934NWYG/"
}
]
},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"content_md5sum": "c80d69bc6a1664972ffd27335bf40e9a",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-13T10:51:28.772979+00:00",
"file_format": "fastq",
"file_set": "/auxiliary-sets/IGVFDS1470QEOX/",
"file_size": 13052089,
"gene_list_for": [],
"href": "/sequence-files/IGVFFI1934NWYG/@@download/IGVFFI1934NWYG.fastq.gz",
"illumina_read_type": "R2",
"index": "TCTGGCGA:GTCA",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/jesse-engreitz/",
"title": "Jesse Engreitz, Stanford"
},
"loci_list_for": [],
"maximum_read_length": 150,
"md5sum": "1820faff13e1c909281849511b0a6a65",
"mean_read_length": 150,
"minimum_read_length": 150,
"read_count": 300911,
"release_timestamp": "2023-12-21T01:05:14.508411+00:00",
"s3_uri": "s3://igvf-files/2023/12/13/63ede504-409a-4d95-b668-4a5bbdefdccb/IGVFFI1934NWYG.fastq.gz",
"schema_version": "14",
"seqspecs": [],
"sequencing_platform": "/platform-terms/EFO_0008566/",
"sequencing_run": 1,
"status": "released",
"submitted_by": {
"@id": "/users/f9e7cd82-a407-4a20-89ee-f4dc668b0cbe/",
"title": "Michael Montgomery"
},
"submitted_file_name": "230423pPPIFEnformerJurkat-Jurkat-PE-pPPIF_Enformer-Amp-pPPIF-BioRep1-FFRep3_BinB-PCRrep3_S111_R2_001.fastq.gz",
"summary": "R2 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "63ede504-409a-4d95-b668-4a5bbdefdccb"
}