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IGVFFI1933ZBNE

released
validated
File Set
IGVFDS4158FYXM(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp16_atac_10x1_NGS2_r3
md5sum
5bfe5bdb32ccb93f8d7e13d5e8260fa5
Content MD5sum
300d2f9e70b9e8fdbb84af2df49fc22a
File Size
6.6 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf16/ATAC/CMAS18_ATAC1_S58_L006_R3_001.fastq.gz
Checkfiles Version
v14
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22NC7YLT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R3
Average Read Length
50
Read Count
212620451

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
5.1 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2537DZAE, IGVFFI5766ZQNT, IGVFFI1933ZBNE, IGVFFI9506XLYD
Ansuman Satpathy, Stanford
1.4 KB
validated