Home

IGVFFI1933NLMT

released
validated
File Set
IGVFDS7448MPLU(SUPERSTARR integrating a reporter library targeting random selections genome-wide)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
tim-reddy:starr-seq-rna-fastq-k562-P017-R1
md5sum
d5c1c9f5c3fe3e91abb30ba21803ad87
Content MD5sum
3877da7f4452db69490af07a6c66b37b
File Size
8.0 GB
Submitted File Name
/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_1_STARR_seq/K562.starrseq.rna.pool17.R1.fastq.gz
Checkfiles Version
v14
Attribution
Tim Reddy, Duke

Sequencing Details

Sequencing Platform
Illumina NextSeq 2000
Sequencing Run
1
Flowcell ID
AAFHYKJM5
Lane
1
Sequencing Kit
NextSeq 2000 P3 XLEAP-SBS Reagent Kit
Illumina Read Type
R1
Average Read Length
301
Read Count
64793127

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) K562 cell line transfected with a reporter library

Files Derived From This File

2 items
bam
alignments
custom assembly unfiltered alignments
Tim Reddy, Duke
8.0 GB
validated
bam
alignments
GRCh38 unfiltered alignments
Tim Reddy, Duke
7.9 GB
validated