IGVFFI1925YVZG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2723SVTT(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X032_G6_P031_L003_R1

md5sum

d2239d7193c4862b05ca74eb8376004a

Content MD5sum

356379870e15f363e7f15f256018f1e2

File Size

9.3 GB

Submitted File Name

Multiome_ATAC_X032_G6_L006_P031_S42_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

172805221

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8028VLKJ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (female, 70 years) substantia nigra tissue associated with cerebral amyloid angiopathy; ... and 10 more samples