IGVFFI1922GHTF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7490BLYT(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X024_G8_P023_L003_I1

md5sum

976278cd0023bec0e814e5ed5191cc67

Content MD5sum

58e9d266853f9240ab0e5a78a21e343b

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_X024_G8_L008_P023_S32_L003_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

141602381

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4069JELD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples