IGVFFI1909JVGL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7684ZRZD(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X037_G8_P037_L001_R1

md5sum

4c9c6e1c4631cd6ac65ed64ce605e4f3

Content MD5sum

19d7333d1b34e46c53069edd40662d09

File Size

7.6 GB

Submitted File Name

Multiome_ATAC_X037_G8_L008_P037_S14_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

246419313

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2081GQXM

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 81 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 81 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples