IGVFFI1891DJDO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7430EPZO(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X043_G6_P043_L007_R2

md5sum

44f3456dd0e6862003a8828221e44733

Content MD5sum

88b82e1b4a9d729af0def89810eef0d5

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_X043_G6_L006_P043_S32_L007_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

64347533

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1854LWZV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples