IGVFFI1886BGQX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1992IYHH(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X040_G3_P041_L003_R2

md5sum

28e47849708bdfb72fc2a6e1f795c64c

Content MD5sum

57bdc73109f1fcccfdc7a5a02e4e5704

File Size

989 MB

Submitted File Name

Multiome_ATAC_X040_G3_L003_P041_S5_L003_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

57171670

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1109QIDV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples