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IGVFFI1882TZQH

released
validated
File Set
IGVFDS7168GITK(lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp18_multi_10x1_NGS1_r1
md5sum
b95dd4adebc6e744e995fd2cc214157e
Content MD5sum
024e38550bb38f16baede21157446a42
File Size
88 MB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf18/MULTI/IGVF18_MULTI1-CMAS24_S56_L004_R1_001.fastq.gz
Checkfiles Version
v14
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22JL3JLT4
Lane
1
Sequencing Kit
NovaSeq X Series 25B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
3974613

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) IMR-90 cell line; Homo sapiens (female) MCF-7 cell line; ... and 17 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
747 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1882TZQH, IGVFFI9425XUHZ, IGVFFI2894YADS
Ansuman Satpathy, Stanford
1.3 KB
validated