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INDEXED
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SequenceFile
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IGVFFI1867GDAA
IGVFFI1867GDAA
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS8295KFHG
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X044_G1_P044_L008_R1
md5sum
d67dd95e1927d2f72b6216402e94a7ed
Content MD5sum
580db6ff04f3c962ca3e9dde22460329
File Size
1.1 GB
Submitted File Name
Multiome_RNA_X044_G1_L001_P044_S35_L008_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
222YMLLT3
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
57138304
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2720AOAW
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples