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INDEXED
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SequenceFile
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IGVFFI1858ZMBL
IGVFFI1858ZMBL
released
validated
Json view
File Set
IGVFDS7359TFTN
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_atac_10x2_NGS1_r3
md5sum
6f1a6e37892157589745392ecd17242c
Content MD5sum
37683d5b0ac110672916fe38d71644d2
File Size
5.2 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/ATAC/FASTQ/ATAC2_S21_L007_R3_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225JTGLT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R3
Average Read Length
51
Read Count
172036203
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5189FTFS
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI2013BVRU
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.5 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI2020LNIP
yaml
seqspec
seqspec of IGVFFI1675JYIK, IGVFFI5791ZCZX, IGVFFI1713PZKF, IGVFFI1858ZMBL
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford