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IGVFFI1847DJVR

released
validated
File Set
IGVFDS0020LQRY(single-cell ATAC-seq (SHARE-seq))
Summary
R1 reads from sequencing run 41
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2003_R1
bradley-bernstein:SS-LS_41_R1
buenrostro-bernstein:SS-LS_2003_R1
buenrostro-bernstein:SS-LS_41_R1
md5sum
d1e993df612ce2b1b87411336a3432f4
Content MD5sum
d7354035a37906a80bb7a47b92029c7d
File Size
641 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-156_L1_SS-PKR-129_2022-APRIL-R1-PLATE2-ENTIRE-PLATE_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
41
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
23285936

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)

Files Derived From This File

2 items
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
431 MB
validated
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
3.1 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1847DJVR, IGVFFI0003RJLQ
Jason Buenrostro, Broad
1.2 KB
validated