IGVFFI1839JTYQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9846PMTW(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X021_G5_P021_L001_R2

md5sum

a272b054d87cbd9d8875ccee3a62c11e

Content MD5sum

74948e098c35131dda874d5303d259da

File Size

5.2 GB

Submitted File Name

Multiome_ATAC_X021_G5_L005_P021_S3_L001_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

307478156

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5683BJEZ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 90 or above years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples