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INDEXED
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SequenceFile
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IGVFFI1836HWZA
IGVFFI1836HWZA
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS5819VBCX
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP033_G5_P080_L008_R1
md5sum
3c044607ded66cdc3ec6c45c348b3ee1
Content MD5sum
acae295524f118635a98adae2c363fdf
File Size
13 GB
Submitted File Name
Multiome_RNA_RP033_G5_L005_P080_S57_L008_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
19NHCA4LE
Lane
8
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
151
Read Count
143027704
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2223HMDU
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) substantia nigra tissue associated with Parkinson's disease; ... and 6 more samples