IGVFFI1831EEUZ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI1831EEUZ/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI1831EEUZ",
10    "aliases": [
11        "ansuman-satpathy:igvf_mouse_bridge_101_rna_r1"
12    ],
13    "assay_titles": [
14        "10x multiome"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "content_md5sum": "152dd9696c7cd39b2dd79f66853123e7",
22    "content_type": "reads",
23    "controlled_access": false,
24    "creation_timestamp": "2024-07-23T01:22:22.684153+00:00",
25    "externally_hosted": false,
26    "file_format": "fastq",
27    "file_set": {
28        "@id": "/measurement-sets/IGVFDS9624INNM/",
29        "@type": [
30            "MeasurementSet",
31            "FileSet",
32            "Item"
33        ],
34        "accession": "IGVFDS9624INNM",
35        "assay_term": {
36            "@id": "/assay-terms/OBI_0003109/",
37            "term_name": "single-nucleus RNA sequencing assay"
38        },
39        "file_set_type": "experimental data",
40        "samples": [
41            {
42                "@id": "/tissues/IGVFSM2776DDRF/",
43                "@type": [
44                    "Tissue",
45                    "Biosample",
46                    "Sample",
47                    "Item"
48                ],
49                "accession": "IGVFSM2776DDRF",
50                "classifications": [
51                    "tissue"
52                ],
53                "sample_terms": [
54                    {
55                        "@id": "/sample-terms/NTR_0000646/",
56                        "status": "released",
57                        "term_name": "left cerebral cortex"
58                    }
59                ],
60                "status": "released",
61                "summary": "Mus musculus CAST/EiJ (male, 10 weeks) left cerebral cortex tissue",
62                "taxa": "Mus musculus"
63            }
64        ],
65        "status": "released",
66        "summary": "single-nucleus RNA sequencing assay (10x multiome)"
67    },
68    "file_size": 10824069936,
69    "flowcell_id": "HW2WLDSX5",
70    "gene_list_for": [],
71    "href": "/sequence-files/IGVFFI1831EEUZ/@@download/IGVFFI1831EEUZ.fastq.gz",
72    "illumina_read_type": "R1",
73    "input_file_for": [
74        "/matrix-files/IGVFFI0784SYHV/"
75    ],
76    "integrated_in": [],
77    "lab": {
78        "@id": "/labs/ansuman-satpathy/",
79        "title": "Ansuman Satpathy, Stanford"
80    },
81    "lane": 4,
82    "loci_list_for": [],
83    "maximum_read_length": 28,
84    "md5sum": "85dc3a75c9ec080e442370b50498787a",
85    "mean_read_length": 28,
86    "minimum_read_length": 28,
87    "quality_metrics": [],
88    "read_count": 533167740,
89    "read_names": [
90        "Read 1"
91    ],
92    "release_timestamp": "2025-03-07T01:18:32.629699+00:00",
93    "s3_uri": "s3://igvf-files/2024/07/23/5615695f-be11-461b-aeda-56c3d0bf1f4d/IGVFFI1831EEUZ.fastq.gz",
94    "schema_version": "15",
95    "seqspecs": [
96        "/configuration-files/IGVFFI7597MNBE/"
97    ],
98    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
99    "sequencing_platform": {
100        "@id": "/platform-terms/EFO_0008637/",
101        "status": "released",
102        "term_name": "Illumina NovaSeq 6000"
103    },
104    "sequencing_run": 1,
105    "status": "released",
106    "submitted_by": {
107        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
108        "title": "Christopher Mcginnis"
109    },
110    "submitted_file_name": "/oak/stanford/projects/igvf/Projects/230622_IGVF_Bridge_McGinnis/GEX/RNA_101_S1_L004_R1_001.fastq.gz",
111    "summary": "R1 reads from sequencing run 1",
112    "upload_status": "validated",
113    "uuid": "5615695f-be11-461b-aeda-56c3d0bf1f4d"
114}