IGVFFI1828QWTB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5287UBUV(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X044_G3_P043_L006_I1

md5sum

b9edecf22fb7d9aa2764a19df4447473

Content MD5sum

35e683f397c8834e74e31bc899cfec47

File Size

456 MB

Submitted File Name

Multiome_ATAC_X044_G3_L003_P043_S37_L006_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

60377908

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7680WXDX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples