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IGVFFI1826XYXN

released
validated
File Set
IGVFDS1673EWYY(lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites genome-wide associated with autism spectrum disorder)
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
md5sum
9e1f6292efd8f192859bf075a886f507
Content MD5sum
c15e02de3b0ad54323ac0d684b3fe0c8
File Size
732 MB
Submitted File Name
"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/ASD_nadav/counts/TSTFI62562082RNA_rep3_R1.fastq.gz"

Sequencing Details

Sequencing Platform
Illumina NextSeq 500
Sequencing Run
1
Sequencing Kit
NextSeq 500 Mid Output v2 Kit
Illumina Read Type
R1
Average Read Length
15
Read Count
34113747

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
neural progenitor pooled cell specimen, Homo sapiens transfected with a reporter library

Files Derived From This File

3 items
tsv
reporter experiment
reporter experiment
Nadav Ahituv, UCSF
553 KB
validated
tsv
reporter genomic variant effects
reporter genomic variant effects
Nadav Ahituv, UCSF
121 KB
validated
tsv
reporter experiment
reporter experiment
Nadav Ahituv, UCSF
543 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1826XYXN, IGVFFI9143OBKT, IGVFFI9284SYXM
Nadav Ahituv, UCSF
1.3 KB
validated

Attribution

Award
HG011966
Principal Investigator(s)
Contact P.I.
Jay Shendure
Lab
Nadav Ahituv, UCSF