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IGVFFI1801NWGU

released
validated
File Set
IGVFDS0020LQRY(single-cell ATAC-seq (SHARE-seq))
Summary
R2 reads from sequencing run 241
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2031_R2
bradley-bernstein:SS-LS_241_R2
buenrostro-bernstein:SS-LS_2031_R2
buenrostro-bernstein:SS-LS_241_R2
md5sum
e57e74bff2b5d78d46dc6dcb84709e35
Content MD5sum
c66e271a7d844d543394f67c3711f90a
File Size
1.2 GB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-156_L2_SS-PKR-129_2022-APRIL-R1-PLATE2-ENTIRE-PLATE_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
241
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
23198218

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)

Files Derived From This File

2 items
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
431 MB
validated
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
3.1 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI9218BUCK, IGVFFI1801NWGU
Jason Buenrostro, Broad
1.2 KB
validated