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IGVFFI1779UNVR

released
validated
File Set
IGVFDS2183INAQ(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
buenrostro-bernstein:surya-DSS21BC-more2-2-RNA.R1.fastq.gz
md5sum
b0ff1df3629616735022ce9eca3a177f
Content MD5sum
993bff7837c6dfe3768ad4747c4354e7
File Size
20 GB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/submit-fqs/DSS21BC-more2-2-RNA.R1.fastq.gz
Checkfiles Version
v14
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
100
Read Count
391454461

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
282 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI2979RGGQ, IGVFFI1779UNVR, IGVFFI0701QRLV
Jason Buenrostro, Broad
1.2 KB
validated