IGVFFI1771JOTI

released

validated

File Set

IGVFDS2394VMWJ(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin6hrs-FF1-BinE-PCR3_Rep1_S127

md5sum

0352a26ce0b4aa26fba20107a57e1dbb

Content MD5sum

460cc0d1f50fff80c66ab1876cc94f90

File Size

17 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin6hrs-FF1-BinE-PCR3-Rep1_S127_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

GCACACGA:TTGA

Average Read Length

Read Count

876914

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM0264XNND

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin E for 80-90% expression of MYC) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library