{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI1763VPAA/",
"@type": [
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"File",
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],
"accession": "IGVFFI1763VPAA",
"aliases": [
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],
"assay_titles": [
"HiCAR"
],
"audit": {},
"award": {
"@id": "/awards/HG012053/",
"component": "functional characterization"
},
"content_md5sum": "9461d83f1c873669dcf5d96078697129",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2024-10-23T19:29:50.431438+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/measurement-sets/IGVFDS0621CXBC/",
"accession": "IGVFDS0621CXBC",
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{
"@id": "/in-vitro-systems/IGVFSM7656WGBF/",
"accession": "IGVFSM7656WGBF",
"classifications": [
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],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0022835/",
"status": "released",
"term_name": "HL-1"
}
],
"status": "released",
"summary": "HL-1 cell line, female, Mus musculus C57BL/6J transfected with a guide library",
"taxa": "Mus musculus"
}
],
"status": "released",
"summary": "CRISPR HiCAR integrating a non-targeting guide (sgRNA) library"
},
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"gene_list_for": [],
"href": "/sequence-files/IGVFFI1763VPAA/@@download/IGVFFI1763VPAA.fastq.gz",
"illumina_read_type": "R1",
"input_file_for": [
"/matrix-files/IGVFFI3659KHPI/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/charles-gersbach/",
"title": "Charles Gersbach, Duke"
},
"loci_list_for": [],
"maximum_read_length": 100,
"md5sum": "c3d89b4c1893773c15e8849b61f65bf9",
"mean_read_length": 100,
"minimum_read_length": 100,
"read_count": 25436371,
"release_timestamp": "2024-12-13T19:43:28.449557+00:00",
"s3_uri": "s3://igvf-files/2024/10/23/aeb227a6-efcc-4c31-b0ea-0688b5fe99a6/IGVFFI1763VPAA.fastq.gz",
"schema_version": "14",
"seqspecs": [],
"sequencing_kit": "NextSeq 1000/2000 P2 Reagent Kit",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0010963/",
"status": "released",
"term_name": "Illumina NextSeq 2000"
},
"sequencing_run": 4,
"status": "released",
"submitted_by": {
"@id": "/users/3782ce69-0e9f-4b46-91f9-4578139785c7/",
"title": "Ruhi Rai"
},
"submitted_file_name": "/hpc/group/gersbachlab/tda17/IGVF_data_files/HiCAR/fastq/crispra_mouse/crispra_hicar_mouse_fastq/HL_1_TA432_NT_3_noET1_ds.5720bfa8bf024aa486b9e180878a5e08/HL_1_TA432_NT_3_noET1_S13_L001_R1_001.fastq.gz",
"summary": "R1 reads from sequencing run 4",
"upload_status": "validated",
"uuid": "aeb227a6-efcc-4c31-b0ea-0688b5fe99a6"
}