IGVFFI1750OSTQ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8549HZIC(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X054_G7_P071_L007_R1

md5sum

b9cba9c369d4c00f571de08375f71cf0

Content MD5sum

08c954fd40d5d3373d2e0470de744fb0

File Size

12 GB

Submitted File Name

Multiome_ATAC_X054_G7_L007_P071_S59_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19RTCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

165436117

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5537DDNC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) putamen tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 8 more samples