IGVFFI1750MKDV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9058STTC(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G4_P057_L004_I1

md5sum

7b7feffc24dffbbcffdc06ce9684c0f7

Content MD5sum

5773f2d28da429ff39af403952ccd839

File Size

395 MB

Submitted File Name

Multiome_ATAC_RP009_G4_L004_P057_S12_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

49144004

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9386ETNP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples