IGVFFI1750GIIR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3423DTHY(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP018_G5_P063_L005_R1

md5sum

66a768ec0b5a455e0c5858eee7aadb30

Content MD5sum

6c9ab221786c07b142947f4ce308e43a

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_RP018_G5_L005_P063_S33_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

62658811

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7137MKTX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples